Cluster: ChuDM_2017_SRR8942393_bin.2_CGC18
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942393_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_35 | 39411 | 40739 | - | GH4 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_36 | 40759 | 41028 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_37 | 41067 | 42629 | - | 4.A.1.1.16 |
| STP | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_38 | 43796 | 45826 | + | Pyr_redox_2 |
| TF | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_39 | 46276 | 46671 | + | 0039939 |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_40 | 46853 | 49735 | + | 3.D.1.4.2 |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_41 | 49748 | 50365 | + | 3.D.1.4.2 |
| pfam | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_42 | 50365 | 51075 | + | Complex1_30kDa |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_12247 | ChuDM_2017_SRR8942393_bin.2_k119_12247_43 | 51081 | 52169 | + | 3.D.1.4.2 |
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_35
Type: CAZyme
Location: 39411 - 40739 (-)
Type: CAZyme
Location: 39411 - 40739 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_36
Type:
Location: 40759 - 41028 (-)
Type:
Location: 40759 - 41028 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_37
Type: TC
Location: 41067 - 42629 (-)
Type: TC
Location: 41067 - 42629 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_38
Type: STP
Location: 43796 - 45826 (+)
Type: STP
Location: 43796 - 45826 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_39
Type: TF
Location: 46276 - 46671 (+)
Type: TF
Location: 46276 - 46671 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_40
Type: TC
Location: 46853 - 49735 (+)
Type: TC
Location: 46853 - 49735 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_41
Type: TC
Location: 49748 - 50365 (+)
Type: TC
Location: 49748 - 50365 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_42
Type: pfam
Location: 50365 - 51075 (+)
Type: pfam
Location: 50365 - 51075 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_12247_43
Type: TC
Location: 51081 - 52169 (+)
Type: TC
Location: 51081 - 52169 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.