Cluster: ChuDM_2017_SRR8942393_bin.2_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942393_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942393_bin.2_k119_9343 | ChuDM_2017_SRR8942393_bin.2_k119_9343_11 | 16934 | 17725 | + | 9.B.18.1.2 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_9343 | ChuDM_2017_SRR8942393_bin.2_k119_9343_12 | 17726 | 18835 | + | GT4 |
| pfam | ChuDM_2017_SRR8942393_bin.2_k119_9343 | ChuDM_2017_SRR8942393_bin.2_k119_9343_13 | 18835 | 19953 | + | PS_pyruv_trans |
| STP | ChuDM_2017_SRR8942393_bin.2_k119_9343 | ChuDM_2017_SRR8942393_bin.2_k119_9343_14 | 19966 | 21171 | + | Fer4 | Fer4 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_9343 | ChuDM_2017_SRR8942393_bin.2_k119_9343_15 | 21164 | 22381 | + | GT4 |
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_9343_11
Type: TC
Location: 16934 - 17725 (+)
Type: TC
Location: 16934 - 17725 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_9343_12
Type: CAZyme
Location: 17726 - 18835 (+)
Type: CAZyme
Location: 17726 - 18835 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_9343_13
Type: pfam
Location: 18835 - 19953 (+)
Type: pfam
Location: 18835 - 19953 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_9343_14
Type: STP
Location: 19966 - 21171 (+)
Type: STP
Location: 19966 - 21171 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_9343_15
Type: CAZyme
Location: 21164 - 22381 (+)
Type: CAZyme
Location: 21164 - 22381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.