Cluster: ChuDM_2017_SRR8942393_bin.2_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: ChuDM_2017_SRR8942393_bin.2
- CGC Family ID: CGCFAM_00014
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_34 | 42240 | 42578 | - | 4.A.3.1.2 |
| TF | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_35 | 42793 | 43797 | - | LacI |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_36 | 44155 | 45930 | + | 4.A.3.1.1 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_37 | 45997 | 47436 | + | GH1 |
| TF | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_38 | 47704 | 48741 | - | LacI |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_39 | 49083 | 50525 | + | GH1 |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_40 | 50698 | 52458 | + | 4.A.3.1.1 |
| TF | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_41 | 52632 | 53642 | - | LacI |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_42 | 53919 | 55697 | + | 4.A.3.1.1 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_43 | 55774 | 57195 | + | GH1 |
| TF | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_44 | 57775 | 58539 | - | HTH_DeoR |
| sulfatase | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_45 | 58745 | 59797 | + | S1_4 |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_8162 | ChuDM_2017_SRR8942393_bin.2_k119_8162_46 | 60019 | 60513 | - | 4.A.6.1.3 |
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_34
Type: TC
Location: 42240 - 42578 (-)
Type: TC
Location: 42240 - 42578 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_35
Type: TF
Location: 42793 - 43797 (-)
Type: TF
Location: 42793 - 43797 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_36
Type: TC
Location: 44155 - 45930 (+)
Type: TC
Location: 44155 - 45930 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_37
Type: CAZyme
Location: 45997 - 47436 (+)
Type: CAZyme
Location: 45997 - 47436 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_38
Type: TF
Location: 47704 - 48741 (-)
Type: TF
Location: 47704 - 48741 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_39
Type: CAZyme
Location: 49083 - 50525 (+)
Type: CAZyme
Location: 49083 - 50525 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_40
Type: TC
Location: 50698 - 52458 (+)
Type: TC
Location: 50698 - 52458 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_41
Type: TF
Location: 52632 - 53642 (-)
Type: TF
Location: 52632 - 53642 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_42
Type: TC
Location: 53919 - 55697 (+)
Type: TC
Location: 53919 - 55697 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_43
Type: CAZyme
Location: 55774 - 57195 (+)
Type: CAZyme
Location: 55774 - 57195 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_44
Type: TF
Location: 57775 - 58539 (-)
Type: TF
Location: 57775 - 58539 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_45
Type: sulfatase
Location: 58745 - 59797 (+)
Type: sulfatase
Location: 58745 - 59797 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_8162_46
Type: TC
Location: 60019 - 60513 (-)
Type: TC
Location: 60019 - 60513 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.