Cluster: ChuDM_2017_SRR8942385_bin.6_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942385_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_10 | 7901 | 9433 | - | 9.B.67.1.1 |
| CAZyme | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_11 | 9455 | 10561 | - | GT4 |
| pfam | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_12 | 10586 | 11707 | - | RF-1 | PCRF |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_13 | 11810 | 11917 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_14 | 12409 | 13776 | + | 2.A.25.1.3 |
| STP | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_15 | 13821 | 14546 | - | Peptidase_M23 |
| pfam | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_16 | 14673 | 16562 | - | SLH |
| TC | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_17 | 16651 | 17877 | - | 3.A.1.122.2 |
| TC | ChuDM_2017_SRR8942385_bin.6_k119_17883 | ChuDM_2017_SRR8942385_bin.6_k119_17883_18 | 17874 | 18629 | - | 3.A.1.122.2 |
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_10
Type: TC
Location: 7901 - 9433 (-)
Type: TC
Location: 7901 - 9433 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_11
Type: CAZyme
Location: 9455 - 10561 (-)
Type: CAZyme
Location: 9455 - 10561 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_12
Type: pfam
Location: 10586 - 11707 (-)
Type: pfam
Location: 10586 - 11707 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_13
Type:
Location: 11810 - 11917 (-)
Type:
Location: 11810 - 11917 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_14
Type: TC
Location: 12409 - 13776 (+)
Type: TC
Location: 12409 - 13776 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_15
Type: STP
Location: 13821 - 14546 (-)
Type: STP
Location: 13821 - 14546 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_16
Type: pfam
Location: 14673 - 16562 (-)
Type: pfam
Location: 14673 - 16562 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_17
Type: TC
Location: 16651 - 17877 (-)
Type: TC
Location: 16651 - 17877 (-)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_17883_18
Type: TC
Location: 17874 - 18629 (-)
Type: TC
Location: 17874 - 18629 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Flavonifractor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.