Cluster: ChuDM_2017_SRR8942385_bin.6_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ChuDM_2017_SRR8942385_bin.6
- CGC Family ID: CGCFAM_01823
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_3 | 2047 | 3423 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_4 | 3436 | 4308 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_5 | 4308 | 5168 | + | 3.A.1.1.28 |
| CAZyme | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_6 | 5283 | 6623 | + | GH32 |
| STP | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_7 | 6658 | 7614 | + | PfkB |
| CAZyme | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_8 | 7604 | 9607 | + | GH13_4 |
| CAZyme | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_9 | 9615 | 11309 | + | GH13_31 |
| CAZyme | ChuDM_2017_SRR8942385_bin.6_k119_565 | ChuDM_2017_SRR8942385_bin.6_k119_565_10 | 11356 | 13536 | - | GH36 |
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_3
Type: TC
Location: 2047 - 3423 (+)
Type: TC
Location: 2047 - 3423 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_4
Type: TC
Location: 3436 - 4308 (+)
Type: TC
Location: 3436 - 4308 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_5
Type: TC
Location: 4308 - 5168 (+)
Type: TC
Location: 4308 - 5168 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_6
Type: CAZyme
Location: 5283 - 6623 (+)
Type: CAZyme
Location: 5283 - 6623 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_7
Type: STP
Location: 6658 - 7614 (+)
Type: STP
Location: 6658 - 7614 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_8
Type: CAZyme
Location: 7604 - 9607 (+)
Type: CAZyme
Location: 7604 - 9607 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_9
Type: CAZyme
Location: 9615 - 11309 (+)
Type: CAZyme
Location: 9615 - 11309 (+)
Gene ID: ChuDM_2017_SRR8942385_bin.6_k119_565_10
Type: CAZyme
Location: 11356 - 13536 (-)
Type: CAZyme
Location: 11356 - 13536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Flavonifractor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942385_bin.6_k119_565_4 | vegan > omnivore | 1.56345 | 0.00455 |
| ChuDM_2017_SRR8942385_bin.6_k119_565_5 | vegan > omnivore | 1.23146 | 0.00455 |
| ChuDM_2017_SRR8942385_bin.6_k119_565_8 | vegan > omnivore | 1.91495 | 0.00455 |
| ChuDM_2017_SRR8942385_bin.6_k119_565_9 | vegan > omnivore | 1.41426 | 0.00455 |