Cluster: ChuDM_2017_SRR8942364_bin.5_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: ChuDM_2017_SRR8942364_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_110 | 129534 | 129872 | - | 4.A.3.1.2 |
| TF | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_111 | 130087 | 131091 | - | LacI |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_112 | 131450 | 133225 | + | 4.A.3.1.1 |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_113 | 133292 | 134731 | + | GH1 |
| TF | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_114 | 134999 | 136036 | - | LacI |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_115 | 136378 | 137820 | + | GH1 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_116 | 137993 | 139753 | + | 4.A.3.1.1 |
| TF | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_117 | 139932 | 140942 | - | LacI |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_118 | 141218 | 142996 | + | 4.A.3.1.1 |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_9711 | ChuDM_2017_SRR8942364_bin.5_k119_9711_119 | 143072 | 144493 | + | GH1 |
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_110
Type: TC
Location: 129534 - 129872 (-)
Type: TC
Location: 129534 - 129872 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_111
Type: TF
Location: 130087 - 131091 (-)
Type: TF
Location: 130087 - 131091 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_112
Type: TC
Location: 131450 - 133225 (+)
Type: TC
Location: 131450 - 133225 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_113
Type: CAZyme
Location: 133292 - 134731 (+)
Type: CAZyme
Location: 133292 - 134731 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_114
Type: TF
Location: 134999 - 136036 (-)
Type: TF
Location: 134999 - 136036 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_115
Type: CAZyme
Location: 136378 - 137820 (+)
Type: CAZyme
Location: 136378 - 137820 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_116
Type: TC
Location: 137993 - 139753 (+)
Type: TC
Location: 137993 - 139753 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_117
Type: TF
Location: 139932 - 140942 (-)
Type: TF
Location: 139932 - 140942 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_118
Type: TC
Location: 141218 - 142996 (+)
Type: TC
Location: 141218 - 142996 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_9711_119
Type: CAZyme
Location: 143072 - 144493 (+)
Type: CAZyme
Location: 143072 - 144493 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905205145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.