Cluster: ChuDM_2017_SRR8942364_bin.5_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942364_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_55 | 52679 | 54412 | - | GH13_30 |
| STP | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_56 | 55160 | 55906 | - | STAS |
| STP | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_57 | 55985 | 58330 | - | GAF | SpoIIE |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_58 | 59077 | 60105 | - | 3.A.1.5.36 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_59 | 60105 | 61196 | - | 3.A.1.5.34 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_60 | 61199 | 62134 | - | 3.A.1.5.11 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_61 | 62149 | 63186 | - | 3.A.1.5.37 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_8620 | ChuDM_2017_SRR8942364_bin.5_k119_8620_62 | 63343 | 65019 | - | 3.A.1.5.35 |
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_55
Type: CAZyme
Location: 52679 - 54412 (-)
Type: CAZyme
Location: 52679 - 54412 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_56
Type: STP
Location: 55160 - 55906 (-)
Type: STP
Location: 55160 - 55906 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_57
Type: STP
Location: 55985 - 58330 (-)
Type: STP
Location: 55985 - 58330 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_58
Type: TC
Location: 59077 - 60105 (-)
Type: TC
Location: 59077 - 60105 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_59
Type: TC
Location: 60105 - 61196 (-)
Type: TC
Location: 60105 - 61196 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_60
Type: TC
Location: 61199 - 62134 (-)
Type: TC
Location: 61199 - 62134 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_61
Type: TC
Location: 62149 - 63186 (-)
Type: TC
Location: 62149 - 63186 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_8620_62
Type: TC
Location: 63343 - 65019 (-)
Type: TC
Location: 63343 - 65019 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905205145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.