Cluster: ChuDM_2017_SRR8942364_bin.5_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942364_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_38 | 40418 | 41212 | - | 3.A.1.34.1 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_39 | 41205 | 42128 | - | 3.A.1.34.1 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_40 | 42318 | 43298 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_41 | 43459 | 44244 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_42 | 44494 | 45897 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_43 | 46079 | 46642 | - | 4.A.1.2.6 |
| peptidase | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_44 | 46889 | 47788 | + | S09.UPW |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_45 | 47836 | 48156 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_46 | 48278 | 50638 | + | 9.A.8.1.6 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_47 | 50762 | 51958 | + | 2.A.1.2.18 |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_5558 | ChuDM_2017_SRR8942364_bin.5_k119_5558_48 | 52141 | 53517 | + | GH13_20 |
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_38
Type: TC
Location: 40418 - 41212 (-)
Type: TC
Location: 40418 - 41212 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_39
Type: TC
Location: 41205 - 42128 (-)
Type: TC
Location: 41205 - 42128 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_40
Type: TC
Location: 42318 - 43298 (-)
Type: TC
Location: 42318 - 43298 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_41
Type:
Location: 43459 - 44244 (-)
Type:
Location: 43459 - 44244 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_42
Type: pfam
Location: 44494 - 45897 (-)
Type: pfam
Location: 44494 - 45897 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_43
Type: TC
Location: 46079 - 46642 (-)
Type: TC
Location: 46079 - 46642 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_44
Type: peptidase
Location: 46889 - 47788 (+)
Type: peptidase
Location: 46889 - 47788 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_45
Type:
Location: 47836 - 48156 (+)
Type:
Location: 47836 - 48156 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_46
Type: TC
Location: 48278 - 50638 (+)
Type: TC
Location: 48278 - 50638 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_47
Type: TC
Location: 50762 - 51958 (+)
Type: TC
Location: 50762 - 51958 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_5558_48
Type: CAZyme
Location: 52141 - 53517 (+)
Type: CAZyme
Location: 52141 - 53517 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905205145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.