Cluster: ChuDM_2017_SRR8942364_bin.5_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942364_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_5 | 6839 | 9289 | - | 4.A.1.1.8 |
| TF | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_6 | 9519 | 10238 | + | GntR |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_7 | 10545 | 11861 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_8 | 11949 | 12803 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_9 | 12803 | 13642 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_10 | 13710 | 14909 | + | 3.A.1.1.22 |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_11 | 15367 | 17634 | - | GT35 |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_13952 | ChuDM_2017_SRR8942364_bin.5_k119_13952_12 | 17763 | 19268 | - | GH77 |
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_5
Type: TC
Location: 6839 - 9289 (-)
Type: TC
Location: 6839 - 9289 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_6
Type: TF
Location: 9519 - 10238 (+)
Type: TF
Location: 9519 - 10238 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_7
Type: TC
Location: 10545 - 11861 (+)
Type: TC
Location: 10545 - 11861 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_8
Type: TC
Location: 11949 - 12803 (+)
Type: TC
Location: 11949 - 12803 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_9
Type: TC
Location: 12803 - 13642 (+)
Type: TC
Location: 12803 - 13642 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_10
Type: TC
Location: 13710 - 14909 (+)
Type: TC
Location: 13710 - 14909 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_11
Type: CAZyme
Location: 15367 - 17634 (-)
Type: CAZyme
Location: 15367 - 17634 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_13952_12
Type: CAZyme
Location: 17763 - 19268 (-)
Type: CAZyme
Location: 17763 - 19268 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905205145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.