Cluster: ChuDM_2017_SRR8942364_bin.5_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942364_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942364_bin.5_k119_12816 | ChuDM_2017_SRR8942364_bin.5_k119_12816_142 | 181936 | 182652 | - | 9.B.143.2.3 |
| pfam | ChuDM_2017_SRR8942364_bin.5_k119_12816 | ChuDM_2017_SRR8942364_bin.5_k119_12816_143 | 182906 | 185041 | + | Radical_SAM_N | DUF3362 |
| TC | ChuDM_2017_SRR8942364_bin.5_k119_12816 | ChuDM_2017_SRR8942364_bin.5_k119_12816_144 | 185168 | 186538 | - | 4.A.1.2.11 |
| CAZyme | ChuDM_2017_SRR8942364_bin.5_k119_12816 | ChuDM_2017_SRR8942364_bin.5_k119_12816_145 | 186550 | 188028 | - | GH1 |
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_12816_142
Type: TC
Location: 181936 - 182652 (-)
Type: TC
Location: 181936 - 182652 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_12816_143
Type: pfam
Location: 182906 - 185041 (+)
Type: pfam
Location: 182906 - 185041 (+)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_12816_144
Type: TC
Location: 185168 - 186538 (-)
Type: TC
Location: 185168 - 186538 (-)
Gene ID: ChuDM_2017_SRR8942364_bin.5_k119_12816_145
Type: CAZyme
Location: 186550 - 188028 (-)
Type: CAZyme
Location: 186550 - 188028 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905205145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942364_bin.5_k119_12816_144 | vegan > omnivore | 1.07985 | 0.01560 |
| ChuDM_2017_SRR8942364_bin.5_k119_12816_145 | vegan > omnivore | 1.12955 | 0.01560 |