Cluster: ChuDM_2017_SRR8942361_bin.8_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_4873 | ChuDM_2017_SRR8942361_bin.8_k119_4873_66 | 66733 | 68133 | + | AA4 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_4873 | ChuDM_2017_SRR8942361_bin.8_k119_4873_67 | 68193 | 69107 | - | Choline_kinase | APH | EcKL |
| TF | ChuDM_2017_SRR8942361_bin.8_k119_4873 | ChuDM_2017_SRR8942361_bin.8_k119_4873_68 | 69153 | 69920 | - | HTH_AraC | HTH_AraC |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4873 | ChuDM_2017_SRR8942361_bin.8_k119_4873_69 | 69932 | 71137 | - | 8.A.59.2.1 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4873_66
Type: CAZyme
Location: 66733 - 68133 (+)
Type: CAZyme
Location: 66733 - 68133 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4873_67
Type: pfam
Location: 68193 - 69107 (-)
Type: pfam
Location: 68193 - 69107 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4873_68
Type: TF
Location: 69153 - 69920 (-)
Type: TF
Location: 69153 - 69920 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4873_69
Type: TC
Location: 69932 - 71137 (-)
Type: TC
Location: 69932 - 71137 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.