Cluster: ChuDM_2017_SRR8942361_bin.8_CGC6
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- CGC Family ID: CGCFAM_08116
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_122 | 123127 | 123876 | - | 3.A.1.3.13 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_123 | 123894 | 124601 | - | 3.A.1.3.13 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_124 | 124618 | 125412 | - | 3.A.1.3.13 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_125 | 125432 | 126295 | - | 3.A.1.3.14 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_126 | 126337 | 127335 | - | URO-D |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_127 | 127759 | 128529 | - | adh_short | adh_short_C2 |
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_128 | 128668 | 130068 | + | AA4 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_129 | 130187 | 131347 | - | 2.A.1.60.3 |
| TF | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_130 | 131576 | 132349 | - | HTH_AraC | HTH_AraC |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_131 | 132336 | 134054 | - | 8.A.59.2.1 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_132 | 134081 | 135748 | - | 3.A.1.20.1 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_133 | 135732 | 136841 | - | 3.A.1.20.1 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_134 | 136927 | 137973 | - | 3.A.1.20.1 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_135 | 138459 | 139283 | + | 3.A.1.24.5 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_122
Type: TC
Location: 123127 - 123876 (-)
Type: TC
Location: 123127 - 123876 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_123
Type: TC
Location: 123894 - 124601 (-)
Type: TC
Location: 123894 - 124601 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_124
Type: TC
Location: 124618 - 125412 (-)
Type: TC
Location: 124618 - 125412 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_125
Type: TC
Location: 125432 - 126295 (-)
Type: TC
Location: 125432 - 126295 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_126
Type: pfam
Location: 126337 - 127335 (-)
Type: pfam
Location: 126337 - 127335 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_127
Type: pfam
Location: 127759 - 128529 (-)
Type: pfam
Location: 127759 - 128529 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_128
Type: CAZyme
Location: 128668 - 130068 (+)
Type: CAZyme
Location: 128668 - 130068 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_129
Type: TC
Location: 130187 - 131347 (-)
Type: TC
Location: 130187 - 131347 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_130
Type: TF
Location: 131576 - 132349 (-)
Type: TF
Location: 131576 - 132349 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_131
Type: TC
Location: 132336 - 134054 (-)
Type: TC
Location: 132336 - 134054 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_132
Type: TC
Location: 134081 - 135748 (-)
Type: TC
Location: 134081 - 135748 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_133
Type: TC
Location: 135732 - 136841 (-)
Type: TC
Location: 135732 - 136841 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_134
Type: TC
Location: 136927 - 137973 (-)
Type: TC
Location: 136927 - 137973 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_135
Type: TC
Location: 138459 - 139283 (+)
Type: TC
Location: 138459 - 139283 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.