Cluster: ChuDM_2017_SRR8942361_bin.8_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_77 | 75860 | 77323 | + | GT83 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_78 | 77558 | 77989 | + | HSP20 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_79 | 78140 | 79306 | - | 2.A.39.1.3 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_80 | 79326 | 79703 | - | DUF488 | DUF488-N3a | DUF488-N3i |
| STP | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_81 | 79796 | 80635 | - | PfkB |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_4008 | ChuDM_2017_SRR8942361_bin.8_k119_4008_82 | 80727 | 82664 | - | 3.A.1.121.4 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_77
Type: CAZyme
Location: 75860 - 77323 (+)
Type: CAZyme
Location: 75860 - 77323 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_78
Type: pfam
Location: 77558 - 77989 (+)
Type: pfam
Location: 77558 - 77989 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_79
Type: TC
Location: 78140 - 79306 (-)
Type: TC
Location: 78140 - 79306 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_80
Type: pfam
Location: 79326 - 79703 (-)
Type: pfam
Location: 79326 - 79703 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_81
Type: STP
Location: 79796 - 80635 (-)
Type: STP
Location: 79796 - 80635 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_4008_82
Type: TC
Location: 80727 - 82664 (-)
Type: TC
Location: 80727 - 82664 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.