Cluster: ChuDM_2017_SRR8942361_bin.8_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- CGC Family ID: CGCFAM_00279
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_2 | 529 | 2994 | - | 1.B.23.1.5 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_3 | 3798 | 5183 | - | 2.A.25.1.4 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_4 | 5597 | 6352 | - | SurE |
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_5 | 6361 | 7611 | - | GT2 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_6 | 7633 | 8307 | - | CDP-OH_P_transf |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_7 | 8304 | 8942 | - | PS_Dcarbxylase |
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_1790 | ChuDM_2017_SRR8942361_bin.8_k119_1790_8 | 8959 | 9687 | - | GT26 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_2
Type: TC
Location: 529 - 2994 (-)
Type: TC
Location: 529 - 2994 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_3
Type: TC
Location: 3798 - 5183 (-)
Type: TC
Location: 3798 - 5183 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_4
Type: pfam
Location: 5597 - 6352 (-)
Type: pfam
Location: 5597 - 6352 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_5
Type: CAZyme
Location: 6361 - 7611 (-)
Type: CAZyme
Location: 6361 - 7611 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_6
Type: pfam
Location: 7633 - 8307 (-)
Type: pfam
Location: 7633 - 8307 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_7
Type: pfam
Location: 8304 - 8942 (-)
Type: pfam
Location: 8304 - 8942 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_1790_8
Type: CAZyme
Location: 8959 - 9687 (-)
Type: CAZyme
Location: 8959 - 9687 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.