Cluster: ChuDM_2017_SRR8942361_bin.8_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_3 | 2671 | 3972 | + | 1.A.11.1.4 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_4 | 4142 | 4522 | + | P-II |
| STP | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_5 | 4601 | 5845 | - | Aminotran_1_2 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_6 | 5931 | 6644 | - | 9.B.20.1.4 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_7 | 6799 | 7890 | + | Acyl_transf_3 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_8 | 8004 | 8615 | + | 9.B.27.2.5 |
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_8953 | ChuDM_2017_SRR8942361_bin.8_k119_8953_9 | 8697 | 10322 | + | GT83 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_3
Type: TC
Location: 2671 - 3972 (+)
Type: TC
Location: 2671 - 3972 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_4
Type: pfam
Location: 4142 - 4522 (+)
Type: pfam
Location: 4142 - 4522 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_5
Type: STP
Location: 4601 - 5845 (-)
Type: STP
Location: 4601 - 5845 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_6
Type: TC
Location: 5931 - 6644 (-)
Type: TC
Location: 5931 - 6644 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_7
Type: pfam
Location: 6799 - 7890 (+)
Type: pfam
Location: 6799 - 7890 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_8
Type: TC
Location: 8004 - 8615 (+)
Type: TC
Location: 8004 - 8615 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_8953_9
Type: CAZyme
Location: 8697 - 10322 (+)
Type: CAZyme
Location: 8697 - 10322 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.