Cluster: ChuDM_2017_SRR8942361_bin.8_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.8_k119_7082 | ChuDM_2017_SRR8942361_bin.8_k119_7082_2 | 496 | 1797 | + | 2.A.1.14.1 |
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_7082 | ChuDM_2017_SRR8942361_bin.8_k119_7082_3 | 2020 | 3696 | + | GT83 |
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_7082 | ChuDM_2017_SRR8942361_bin.8_k119_7082_4 | 3693 | 4637 | + | GT2 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_7082 | ChuDM_2017_SRR8942361_bin.8_k119_7082_5 | 4751 | 7144 | + | AAA_5 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_7082 | ChuDM_2017_SRR8942361_bin.8_k119_7082_6 | 7156 | 8331 | + | MFS_1 | MFS_2 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_7082 | ChuDM_2017_SRR8942361_bin.8_k119_7082_7 | 8608 | 10092 | + | 2.A.3.3.22 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7082_2
Type: TC
Location: 496 - 1797 (+)
Type: TC
Location: 496 - 1797 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7082_3
Type: CAZyme
Location: 2020 - 3696 (+)
Type: CAZyme
Location: 2020 - 3696 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7082_4
Type: CAZyme
Location: 3693 - 4637 (+)
Type: CAZyme
Location: 3693 - 4637 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7082_5
Type: pfam
Location: 4751 - 7144 (+)
Type: pfam
Location: 4751 - 7144 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7082_6
Type: pfam
Location: 7156 - 8331 (+)
Type: pfam
Location: 7156 - 8331 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7082_7
Type: TC
Location: 8608 - 10092 (+)
Type: TC
Location: 8608 - 10092 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.