Cluster: ChuDM_2017_SRR8942361_bin.8_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.8
- CGC Family ID: CGCFAM_01696
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942361_bin.8_k119_7076 | ChuDM_2017_SRR8942361_bin.8_k119_7076_6 | 3600 | 4418 | - | CE4 |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_7076 | ChuDM_2017_SRR8942361_bin.8_k119_7076_7 | 4492 | 5454 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | ChuDM_2017_SRR8942361_bin.8_k119_7076 | ChuDM_2017_SRR8942361_bin.8_k119_7076_8 | 5667 | 7202 | - | BPD_transp_1 |
| TC | ChuDM_2017_SRR8942361_bin.8_k119_7076 | ChuDM_2017_SRR8942361_bin.8_k119_7076_9 | 7199 | 7948 | - | 3.A.1.9.1 |
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7076_6
Type: CAZyme
Location: 3600 - 4418 (-)
Type: CAZyme
Location: 3600 - 4418 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7076_7
Type: pfam
Location: 4492 - 5454 (-)
Type: pfam
Location: 4492 - 5454 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7076_8
Type: pfam
Location: 5667 - 7202 (-)
Type: pfam
Location: 5667 - 7202 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.8_k119_7076_9
Type: TC
Location: 7199 - 7948 (-)
Type: TC
Location: 7199 - 7948 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.