Cluster: ChuDM_2017_SRR8942361_bin.17_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- CGC Family ID: CGCFAM_06892
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_23 | 21094 | 21978 | - | 3.A.1.132.3 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_24 | 22193 | 25522 | + | 3.A.1.122.12 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_25 | 25375 | 26535 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_26 | 26909 | 28051 | + | Gly_kinase |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_27 | 28169 | 28627 | + | 4.A.2.1.8 |
| peptidase | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_28 | 28769 | 29350 | + | C56.UNW |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_29 | 29352 | 30698 | + | IMS | IMS_C |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_30 | 30955 | 31656 | + | 3.A.1.125.2 |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_31 | 31659 | 35012 | + | FtsX | FtsX | MacB_PCD | MacB_PCD |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_2961 | ChuDM_2017_SRR8942361_bin.17_k119_2961_32 | 35068 | 38166 | + | GT111 | GT2 | GT8 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_23
Type: TC
Location: 21094 - 21978 (-)
Type: TC
Location: 21094 - 21978 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_24
Type: TC
Location: 22193 - 25522 (+)
Type: TC
Location: 22193 - 25522 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_25
Type:
Location: 25375 - 26535 (-)
Type:
Location: 25375 - 26535 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_26
Type: pfam
Location: 26909 - 28051 (+)
Type: pfam
Location: 26909 - 28051 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_27
Type: TC
Location: 28169 - 28627 (+)
Type: TC
Location: 28169 - 28627 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_28
Type: peptidase
Location: 28769 - 29350 (+)
Type: peptidase
Location: 28769 - 29350 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_29
Type: pfam
Location: 29352 - 30698 (+)
Type: pfam
Location: 29352 - 30698 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_30
Type: TC
Location: 30955 - 31656 (+)
Type: TC
Location: 30955 - 31656 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_31
Type: pfam
Location: 31659 - 35012 (+)
Type: pfam
Location: 31659 - 35012 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_32
Type: CAZyme
Location: 35068 - 38166 (+)
Type: CAZyme
Location: 35068 - 38166 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.