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Cluster: ChuDM_2017_SRR8942361_bin.17_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_6 4658 5425 + 4.A.6.1.17
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_7 5428 6288 + 4.A.6.1.16
pfam ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_8 6600 7796 + S1 | S1 | S1 | S1 | S1_RRP5
pfam ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_9 7993 8421 + Ferritin
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_10 8689 9693 + 3.A.1.3.3
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_11 9771 10430 + 3.A.1.3.14
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_12 10427 11275 + 3.A.1.3.9
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_13 11291 12067 + 3.A.1.3.9
NULL(UNKNOWN) ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_14 12518 12928 + NULL(UNKNOWN)
[View Structural Homologs]
pfam ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_15 13000 13653 + CoaE
CAZyme ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_16 13752 14297 + GH23
pfam ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_17 14400 16625 + Helicase_C | UVR | ResIII | UvrB | UvrB_inter
TF ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_18 16775 17041 + SpoVT_AbrB
TC ChuDM_2017_SRR8942361_bin.17_k119_2961 ChuDM_2017_SRR8942361_bin.17_k119_2961_19 17454 17738 + 4.A.5.1.6
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_6
Type: TC
Location: 4658 - 5425 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_7
Type: TC
Location: 5428 - 6288 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_8
Type: pfam
Location: 6600 - 7796 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_9
Type: pfam
Location: 7993 - 8421 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_10
Type: TC
Location: 8689 - 9693 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_11
Type: TC
Location: 9771 - 10430 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_12
Type: TC
Location: 10427 - 11275 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_13
Type: TC
Location: 11291 - 12067 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_14
Type:
Location: 12518 - 12928 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_15
Type: pfam
Location: 13000 - 13653 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_16
Type: CAZyme
Location: 13752 - 14297 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_17
Type: pfam
Location: 14400 - 16625 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_18
Type: TF
Location: 16775 - 17041 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_2961_19
Type: TC
Location: 17454 - 17738 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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