dbCAN Logo

Cluster: ChuDM_2017_SRR8942361_bin.17_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_5 2694 3179 - 4.A.6.1.13
pfam ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_6 3238 3921 - Ribul_P_3_epim
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_7 4138 4968 - 4.A.6.1.1
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_8 4968 5723 - 4.A.6.1.13
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_9 5834 6250 - 4.A.6.1.10
TF ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_10 6557 7351 + HTH_DeoR
CAZyme ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_11 7975 9135 - CE9
STP ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_12 9218 10387 - SIS
TF ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_13 10413 11141 - GntR
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_14 11256 12353 - 4.A.6.1.4
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_15 12343 13152 - 4.A.6.1.4
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_16 13272 13754 - 4.A.6.1.4
pfam ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_17 13848 14129 - YajC
TC ChuDM_2017_SRR8942361_bin.17_k119_13804 ChuDM_2017_SRR8942361_bin.17_k119_13804_18 14129 14557 - 4.A.6.1.15
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_5
Type: TC
Location: 2694 - 3179 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_6
Type: pfam
Location: 3238 - 3921 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_7
Type: TC
Location: 4138 - 4968 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_8
Type: TC
Location: 4968 - 5723 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_9
Type: TC
Location: 5834 - 6250 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_10
Type: TF
Location: 6557 - 7351 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_11
Type: CAZyme
Location: 7975 - 9135 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_12
Type: STP
Location: 9218 - 10387 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_13
Type: TF
Location: 10413 - 11141 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_14
Type: TC
Location: 11256 - 12353 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_15
Type: TC
Location: 12343 - 13152 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_16
Type: TC
Location: 13272 - 13754 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_17
Type: pfam
Location: 13848 - 14129 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_13804_18
Type: TC
Location: 14129 - 14557 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942361_bin.17_k119_13804_15 vegan > omnivore 1.03046 0.01232

🧭 Explore Read Mapping of CGC

← Back to Cluster List