Cluster: ChuDM_2017_SRR8942361_bin.17_CGC29
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- CGC Family ID: CGCFAM_00012
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_54 | 57252 | 58352 | - | GH170 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_55 | 58443 | 59741 | - | 4.A.3.2.2 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_56 | 59807 | 60109 | - | 4.A.3.2.6 |
| TF | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_57 | 60160 | 61005 | - | HTH_6 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_58 | 61398 | 61730 | + | 4.A.3.2.6 |
| STP | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_59 | 61727 | 62659 | + | SIS |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_11188 | ChuDM_2017_SRR8942361_bin.17_k119_11188_60 | 62656 | 64152 | + | GH1 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_54
Type: CAZyme
Location: 57252 - 58352 (-)
Type: CAZyme
Location: 57252 - 58352 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_55
Type: TC
Location: 58443 - 59741 (-)
Type: TC
Location: 58443 - 59741 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_56
Type: TC
Location: 59807 - 60109 (-)
Type: TC
Location: 59807 - 60109 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_57
Type: TF
Location: 60160 - 61005 (-)
Type: TF
Location: 60160 - 61005 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_58
Type: TC
Location: 61398 - 61730 (+)
Type: TC
Location: 61398 - 61730 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_59
Type: STP
Location: 61727 - 62659 (+)
Type: STP
Location: 61727 - 62659 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_11188_60
Type: CAZyme
Location: 62656 - 64152 (+)
Type: CAZyme
Location: 62656 - 64152 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.