Cluster: ChuDM_2017_SRR8942361_bin.17_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- CGC Family ID: CGCFAM_00233
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_4 | 3793 | 5421 | + | 3.A.1.210.4 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_5 | 5610 | 8561 | + | GH3 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_6 | 9481 | 10338 | - | 3.A.1.24.5 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_7 | 10414 | 11085 | - | 3.A.1.24.5 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_8 | 11078 | 11824 | - | 3.A.1.24.5 |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_9 | 12114 | 13514 | - | HATPase_c | HATPase_c_5 |
| TF | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_10 | 13511 | 14227 | - | LytTR |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_8970 | ChuDM_2017_SRR8942361_bin.17_k119_8970_11 | 14378 | 17509 | + | GH3 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_4
Type: TC
Location: 3793 - 5421 (+)
Type: TC
Location: 3793 - 5421 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_5
Type: CAZyme
Location: 5610 - 8561 (+)
Type: CAZyme
Location: 5610 - 8561 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_6
Type: TC
Location: 9481 - 10338 (-)
Type: TC
Location: 9481 - 10338 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_7
Type: TC
Location: 10414 - 11085 (-)
Type: TC
Location: 10414 - 11085 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_8
Type: TC
Location: 11078 - 11824 (-)
Type: TC
Location: 11078 - 11824 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_9
Type: pfam
Location: 12114 - 13514 (-)
Type: pfam
Location: 12114 - 13514 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_10
Type: TF
Location: 13511 - 14227 (-)
Type: TF
Location: 13511 - 14227 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8970_11
Type: CAZyme
Location: 14378 - 17509 (+)
Type: CAZyme
Location: 14378 - 17509 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.