Cluster: ChuDM_2017_SRR8942361_bin.17_CGC25
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- CGC Family ID: CGCFAM_00004
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_11 | 8888 | 11035 | + | CBM48 | GH13_9 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_12 | 11166 | 13595 | + | GT35 |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_13 | 13669 | 14814 | + | NTP_transferase | Hexapep_GlmU |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_14 | 14818 | 15912 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_15 | 15924 | 17423 | + | GT5 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_16 | 17427 | 20702 | + | GH13_39 | GH77 |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_17 | 20922 | 22691 | + | Choline_kinase | APH | NTP_transf_3 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_8550 | ChuDM_2017_SRR8942361_bin.17_k119_8550_18 | 22719 | 23663 | + | 2.A.7.18.1 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_11
Type: CAZyme
Location: 8888 - 11035 (+)
Type: CAZyme
Location: 8888 - 11035 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_12
Type: CAZyme
Location: 11166 - 13595 (+)
Type: CAZyme
Location: 11166 - 13595 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_13
Type: pfam
Location: 13669 - 14814 (+)
Type: pfam
Location: 13669 - 14814 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_14
Type: pfam
Location: 14818 - 15912 (+)
Type: pfam
Location: 14818 - 15912 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_15
Type: CAZyme
Location: 15924 - 17423 (+)
Type: CAZyme
Location: 15924 - 17423 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_16
Type: CAZyme
Location: 17427 - 20702 (+)
Type: CAZyme
Location: 17427 - 20702 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_17
Type: pfam
Location: 20922 - 22691 (+)
Type: pfam
Location: 20922 - 22691 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_8550_18
Type: TC
Location: 22719 - 23663 (+)
Type: TC
Location: 22719 - 23663 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.