Cluster: ChuDM_2017_SRR8942361_bin.17_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- CGC Family ID: CGCFAM_00970
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.17_k119_7346 | ChuDM_2017_SRR8942361_bin.17_k119_7346_19 | 19394 | 20029 | - | 1.A.78.2.8 |
| TF | ChuDM_2017_SRR8942361_bin.17_k119_7346 | ChuDM_2017_SRR8942361_bin.17_k119_7346_20 | 20148 | 21017 | + | HTH_6 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_7346 | ChuDM_2017_SRR8942361_bin.17_k119_7346_21 | 21306 | 24404 | + | GH3 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.17_k119_7346 | ChuDM_2017_SRR8942361_bin.17_k119_7346_22 | 24404 | 24856 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_7346 | ChuDM_2017_SRR8942361_bin.17_k119_7346_23 | 24956 | 27514 | + | CBM67 | GH78 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_7346 | ChuDM_2017_SRR8942361_bin.17_k119_7346_24 | 27511 | 30003 | + | GH2 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7346_19
Type: TC
Location: 19394 - 20029 (-)
Type: TC
Location: 19394 - 20029 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7346_20
Type: TF
Location: 20148 - 21017 (+)
Type: TF
Location: 20148 - 21017 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7346_21
Type: CAZyme
Location: 21306 - 24404 (+)
Type: CAZyme
Location: 21306 - 24404 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7346_22
Type:
Location: 24404 - 24856 (+)
Type:
Location: 24404 - 24856 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7346_23
Type: CAZyme
Location: 24956 - 27514 (+)
Type: CAZyme
Location: 24956 - 27514 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7346_24
Type: CAZyme
Location: 27511 - 30003 (+)
Type: CAZyme
Location: 27511 - 30003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.