Cluster: ChuDM_2017_SRR8942361_bin.17_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- CGC Family ID: CGCFAM_00386
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_88 | 92992 | 93300 | + | 4.A.3.2.4 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_89 | 93352 | 94671 | + | 4.A.3.2.2 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_90 | 94761 | 95114 | + | 4.A.3.2.8 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_91 | 95108 | 96532 | + | GH1 |
| TF | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_92 | 96643 | 97320 | + | Trans_reg_C |
| STP | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_93 | 97317 | 98369 | + | HATPase_c |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_94 | 98528 | 99340 | + | 3.A.1.134.12 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_7097 | ChuDM_2017_SRR8942361_bin.17_k119_7097_95 | 99330 | 101390 | + | 3.A.1.134.12 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_88
Type: TC
Location: 92992 - 93300 (+)
Type: TC
Location: 92992 - 93300 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_89
Type: TC
Location: 93352 - 94671 (+)
Type: TC
Location: 93352 - 94671 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_90
Type: TC
Location: 94761 - 95114 (+)
Type: TC
Location: 94761 - 95114 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_91
Type: CAZyme
Location: 95108 - 96532 (+)
Type: CAZyme
Location: 95108 - 96532 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_92
Type: TF
Location: 96643 - 97320 (+)
Type: TF
Location: 96643 - 97320 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_93
Type: STP
Location: 97317 - 98369 (+)
Type: STP
Location: 97317 - 98369 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_94
Type: TC
Location: 98528 - 99340 (+)
Type: TC
Location: 98528 - 99340 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_7097_95
Type: TC
Location: 99330 - 101390 (+)
Type: TC
Location: 99330 - 101390 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.