Cluster: ChuDM_2017_SRR8942361_bin.17_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.17
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_79 | 88658 | 89875 | - | 3.A.1.122.1 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_80 | 89872 | 90633 | - | 3.A.1.122.14 |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_81 | 90635 | 92029 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_82 | 92545 | 93900 | - | 2.A.23.1.2 |
| TF | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_83 | 94197 | 95225 | - | LacI |
| pfam | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_84 | 95471 | 96109 | - | LacAB_rpiB | DUF3666 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_85 | 96349 | 97536 | + | GH88 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_86 | 97549 | 98037 | + | 4.A.6.1.14 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_87 | 98068 | 98871 | + | 4.A.6.1.14 |
| TC | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_88 | 98905 | 99765 | + | 4.A.6.1.14 |
| CAZyme | ChuDM_2017_SRR8942361_bin.17_k119_5679 | ChuDM_2017_SRR8942361_bin.17_k119_5679_89 | 99830 | 101749 | + | PL12_1 |
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_79
Type: TC
Location: 88658 - 89875 (-)
Type: TC
Location: 88658 - 89875 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_80
Type: TC
Location: 89872 - 90633 (-)
Type: TC
Location: 89872 - 90633 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_81
Type: pfam
Location: 90635 - 92029 (-)
Type: pfam
Location: 90635 - 92029 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_82
Type: TC
Location: 92545 - 93900 (-)
Type: TC
Location: 92545 - 93900 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_83
Type: TF
Location: 94197 - 95225 (-)
Type: TF
Location: 94197 - 95225 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_84
Type: pfam
Location: 95471 - 96109 (-)
Type: pfam
Location: 95471 - 96109 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_85
Type: CAZyme
Location: 96349 - 97536 (+)
Type: CAZyme
Location: 96349 - 97536 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_86
Type: TC
Location: 97549 - 98037 (+)
Type: TC
Location: 97549 - 98037 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_87
Type: TC
Location: 98068 - 98871 (+)
Type: TC
Location: 98068 - 98871 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_88
Type: TC
Location: 98905 - 99765 (+)
Type: TC
Location: 98905 - 99765 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.17_k119_5679_89
Type: CAZyme
Location: 99830 - 101749 (+)
Type: CAZyme
Location: 99830 - 101749 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.