Cluster: ChuDM_2017_SRR8942360_bin.3_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942360_bin.3
- CGC Family ID: CGCFAM_00198
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_14 | 13765 | 14724 | - | 2.A.7.3.12 |
| STP | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_15 | 15094 | 15351 | - | PTS-HPr |
| pfam | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_16 | 15471 | 16016 | - | PMSR |
| TC | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_17 | 16105 | 18108 | - | 4.A.2.1.7 |
| STP | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_18 | 18129 | 19034 | - | PfkB |
| TF | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_19 | 19034 | 19765 | - | HTH_DeoR |
| TC | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_20 | 19928 | 22246 | - | 3.A.11.1.1 |
| CAZyme | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_21 | 22535 | 25501 | + | GT51 |
| pfam | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_22 | 25691 | 26353 | - | Ribul_P_3_epim |
| pfam | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_23 | 26366 | 27253 | - | MMR_HSR1 | RsgA_GTPase | RsgA_N |
| TC | ChuDM_2017_SRR8942360_bin.3_k119_7918 | ChuDM_2017_SRR8942360_bin.3_k119_7918_24 | 27310 | 29238 | - | 9.B.106.2.2 |
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_14
Type: TC
Location: 13765 - 14724 (-)
Type: TC
Location: 13765 - 14724 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_15
Type: STP
Location: 15094 - 15351 (-)
Type: STP
Location: 15094 - 15351 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_16
Type: pfam
Location: 15471 - 16016 (-)
Type: pfam
Location: 15471 - 16016 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_17
Type: TC
Location: 16105 - 18108 (-)
Type: TC
Location: 16105 - 18108 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_18
Type: STP
Location: 18129 - 19034 (-)
Type: STP
Location: 18129 - 19034 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_19
Type: TF
Location: 19034 - 19765 (-)
Type: TF
Location: 19034 - 19765 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_20
Type: TC
Location: 19928 - 22246 (-)
Type: TC
Location: 19928 - 22246 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_21
Type: CAZyme
Location: 22535 - 25501 (+)
Type: CAZyme
Location: 22535 - 25501 (+)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_22
Type: pfam
Location: 25691 - 26353 (-)
Type: pfam
Location: 25691 - 26353 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_23
Type: pfam
Location: 26366 - 27253 (-)
Type: pfam
Location: 26366 - 27253 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_7918_24
Type: TC
Location: 27310 - 29238 (-)
Type: TC
Location: 27310 - 29238 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Anaerovoracaceae
Genus
Eubacterium_T
Species
Eubacterium_T sp905214225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.