Cluster: ChuDM_2017_SRR8942360_bin.3_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate: alpha-glucan
- Genome ID: ChuDM_2017_SRR8942360_bin.3
- CGC Family ID: CGCFAM_00004
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_5 | 8246 | 9844 | + | GH77 |
| pfam | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_6 | 10892 | 11557 | - | Gram_pos_anchor |
| CAZyme | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_7 | 11697 | 15320 | - | GH13_39 |
| pfam | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_8 | 15344 | 16465 | - | NTP_transferase | Hexapep_GlmU |
| pfam | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_9 | 16478 | 17686 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_10 | 17823 | 19955 | - | CBM48 | GH13_9 |
| CAZyme | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_11 | 20206 | 22338 | + | GT5 |
| CAZyme | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_12 | 22658 | 25303 | + | GT35 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_13 | 26602 | 27408 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_14 | 27402 | 28100 | - | 3.A.1.132.6 |
| TF | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_15 | 28106 | 28477 | - | GntR |
| TC | ChuDM_2017_SRR8942360_bin.3_k119_1342 | ChuDM_2017_SRR8942360_bin.3_k119_1342_16 | 29625 | 30995 | - | 2.A.66.1.32 |
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_5
Type: CAZyme
Location: 8246 - 9844 (+)
Type: CAZyme
Location: 8246 - 9844 (+)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_6
Type: pfam
Location: 10892 - 11557 (-)
Type: pfam
Location: 10892 - 11557 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_7
Type: CAZyme
Location: 11697 - 15320 (-)
Type: CAZyme
Location: 11697 - 15320 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_8
Type: pfam
Location: 15344 - 16465 (-)
Type: pfam
Location: 15344 - 16465 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_9
Type: pfam
Location: 16478 - 17686 (-)
Type: pfam
Location: 16478 - 17686 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_10
Type: CAZyme
Location: 17823 - 19955 (-)
Type: CAZyme
Location: 17823 - 19955 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_11
Type: CAZyme
Location: 20206 - 22338 (+)
Type: CAZyme
Location: 20206 - 22338 (+)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_12
Type: CAZyme
Location: 22658 - 25303 (+)
Type: CAZyme
Location: 22658 - 25303 (+)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_13
Type:
Location: 26602 - 27408 (-)
Type:
Location: 26602 - 27408 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_14
Type: TC
Location: 27402 - 28100 (-)
Type: TC
Location: 27402 - 28100 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_15
Type: TF
Location: 28106 - 28477 (-)
Type: TF
Location: 28106 - 28477 (-)
Gene ID: ChuDM_2017_SRR8942360_bin.3_k119_1342_16
Type: TC
Location: 29625 - 30995 (-)
Type: TC
Location: 29625 - 30995 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Anaerovoracaceae
Genus
Eubacterium_T
Species
Eubacterium_T sp905214225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.