Cluster: ChuDM_2017_SRR8942345_bin.6_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: ChuDM_2017_SRR8942345_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_9 | 9580 | 10686 | - | GH18 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_10 | 10708 | 12300 | - | 8.A.46.2.2 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_11 | 12339 | 15401 | - | 1.B.14.6.13 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_12 | 15864 | 18065 | - | GH84 |
| STP | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_13 | 18103 | 18660 | - | HD |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_14 | 18680 | 19201 | - | Hydrolase_3 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_15 | 19217 | 21811 | - | GH2 |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_16 | 22587 | 23219 | + | DUF308 | DUF308 | DUF308 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_17 | 23429 | 24163 | + | 9.B.104.1.5 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_22346 | ChuDM_2017_SRR8942345_bin.6_k119_22346_18 | 24207 | 24998 | + | 9.B.104.1.2 |
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_9
Type: CAZyme
Location: 9580 - 10686 (-)
Type: CAZyme
Location: 9580 - 10686 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_10
Type: TC
Location: 10708 - 12300 (-)
Type: TC
Location: 10708 - 12300 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_11
Type: TC
Location: 12339 - 15401 (-)
Type: TC
Location: 12339 - 15401 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_12
Type: CAZyme
Location: 15864 - 18065 (-)
Type: CAZyme
Location: 15864 - 18065 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_13
Type: STP
Location: 18103 - 18660 (-)
Type: STP
Location: 18103 - 18660 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_14
Type: pfam
Location: 18680 - 19201 (-)
Type: pfam
Location: 18680 - 19201 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_15
Type: CAZyme
Location: 19217 - 21811 (-)
Type: CAZyme
Location: 19217 - 21811 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_16
Type: pfam
Location: 22587 - 23219 (+)
Type: pfam
Location: 22587 - 23219 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_17
Type: TC
Location: 23429 - 24163 (+)
Type: TC
Location: 23429 - 24163 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_22346_18
Type: TC
Location: 24207 - 24998 (+)
Type: TC
Location: 24207 - 24998 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp003640335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.