Cluster: ChuDM_2017_SRR8942345_bin.6_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: ChuDM_2017_SRR8942345_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942345_bin.6_k119_49375 | ChuDM_2017_SRR8942345_bin.6_k119_49375_19 | 23662 | 25341 | - | 2.A.81.1.2 |
| peptidase | ChuDM_2017_SRR8942345_bin.6_k119_49375 | ChuDM_2017_SRR8942345_bin.6_k119_49375_20 | 25364 | 27721 | - | S01.UPA |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_49375 | ChuDM_2017_SRR8942345_bin.6_k119_49375_21 | 27749 | 29374 | - | GT3 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_49375 | ChuDM_2017_SRR8942345_bin.6_k119_49375_22 | 29784 | 30752 | + | GT2 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_49375 | ChuDM_2017_SRR8942345_bin.6_k119_49375_23 | 30753 | 31652 | + | GT32 |
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_49375_19
Type: TC
Location: 23662 - 25341 (-)
Type: TC
Location: 23662 - 25341 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_49375_20
Type: peptidase
Location: 25364 - 27721 (-)
Type: peptidase
Location: 25364 - 27721 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_49375_21
Type: CAZyme
Location: 27749 - 29374 (-)
Type: CAZyme
Location: 27749 - 29374 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_49375_22
Type: CAZyme
Location: 29784 - 30752 (+)
Type: CAZyme
Location: 29784 - 30752 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_49375_23
Type: CAZyme
Location: 30753 - 31652 (+)
Type: CAZyme
Location: 30753 - 31652 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp003640335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.