Cluster: ChuDM_2017_SRR8942345_bin.6_CGC23
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942345_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_1 | 72 | 821 | + | 3.A.1.27.1 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_2 | 849 | 1580 | + | 3.A.1.27.4 |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_3 | 1582 | 2298 | + | PASTA |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_4 | 2298 | 3407 | + | PseudoU_synth_2 | S4 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_5 | 3420 | 4550 | + | GT4 |
| STP | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_6 | 4595 | 5224 | + | SIS |
| sulfatase | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_7 | 5369 | 6439 | + | S1_22 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_8 | 6535 | 7839 | + | 2.A.1.7.11 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_47976 | ChuDM_2017_SRR8942345_bin.6_k119_47976_9 | 7952 | 9253 | + | 2.A.1.7.11 |
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_1
Type: TC
Location: 72 - 821 (+)
Type: TC
Location: 72 - 821 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_2
Type: TC
Location: 849 - 1580 (+)
Type: TC
Location: 849 - 1580 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_3
Type: pfam
Location: 1582 - 2298 (+)
Type: pfam
Location: 1582 - 2298 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_4
Type: pfam
Location: 2298 - 3407 (+)
Type: pfam
Location: 2298 - 3407 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_5
Type: CAZyme
Location: 3420 - 4550 (+)
Type: CAZyme
Location: 3420 - 4550 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_6
Type: STP
Location: 4595 - 5224 (+)
Type: STP
Location: 4595 - 5224 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_7
Type: sulfatase
Location: 5369 - 6439 (+)
Type: sulfatase
Location: 5369 - 6439 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_8
Type: TC
Location: 6535 - 7839 (+)
Type: TC
Location: 6535 - 7839 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_47976_9
Type: TC
Location: 7952 - 9253 (+)
Type: TC
Location: 7952 - 9253 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp003640335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.