Cluster: ChuDM_2017_SRR8942345_bin.6_CGC21
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: ChuDM_2017_SRR8942345_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_8 | 9831 | 10949 | - | GT4 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_9 | 10949 | 12280 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_10 | 12303 | 13298 | - | GT2 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_11 | 13288 | 14160 | - | GT14 |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_12 | 14157 | 15083 | - | GT8 |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_13 | 15196 | 16521 | - | OmpA |
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_14 | 16723 | 17673 | + | GT101 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_15 | 17854 | 19203 | - | 9.B.145.1.2 |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_46312 | ChuDM_2017_SRR8942345_bin.6_k119_46312_16 | 19346 | 22261 | - | 2.A.6.4.2 |
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_8
Type: CAZyme
Location: 9831 - 10949 (-)
Type: CAZyme
Location: 9831 - 10949 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_9
Type:
Location: 10949 - 12280 (-)
Type:
Location: 10949 - 12280 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_10
Type: CAZyme
Location: 12303 - 13298 (-)
Type: CAZyme
Location: 12303 - 13298 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_11
Type: CAZyme
Location: 13288 - 14160 (-)
Type: CAZyme
Location: 13288 - 14160 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_12
Type: CAZyme
Location: 14157 - 15083 (-)
Type: CAZyme
Location: 14157 - 15083 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_13
Type: pfam
Location: 15196 - 16521 (-)
Type: pfam
Location: 15196 - 16521 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_14
Type: CAZyme
Location: 16723 - 17673 (+)
Type: CAZyme
Location: 16723 - 17673 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_15
Type: TC
Location: 17854 - 19203 (-)
Type: TC
Location: 17854 - 19203 (-)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_46312_16
Type: TC
Location: 19346 - 22261 (-)
Type: TC
Location: 19346 - 22261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp003640335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.