Cluster: ChuDM_2017_SRR8942345_bin.6_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942345_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942345_bin.6_k119_12106 | ChuDM_2017_SRR8942345_bin.6_k119_12106_4 | 3294 | 4964 | + | GH13_38 |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_12106 | ChuDM_2017_SRR8942345_bin.6_k119_12106_5 | 4964 | 5536 | + | Cob_adeno_trans |
| pfam | ChuDM_2017_SRR8942345_bin.6_k119_12106 | ChuDM_2017_SRR8942345_bin.6_k119_12106_6 | 5540 | 6205 | + | UDG |
| TC | ChuDM_2017_SRR8942345_bin.6_k119_12106 | ChuDM_2017_SRR8942345_bin.6_k119_12106_7 | 6210 | 8729 | + | 3.A.11.3.1 |
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_12106_4
Type: CAZyme
Location: 3294 - 4964 (+)
Type: CAZyme
Location: 3294 - 4964 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_12106_5
Type: pfam
Location: 4964 - 5536 (+)
Type: pfam
Location: 4964 - 5536 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_12106_6
Type: pfam
Location: 5540 - 6205 (+)
Type: pfam
Location: 5540 - 6205 (+)
Gene ID: ChuDM_2017_SRR8942345_bin.6_k119_12106_7
Type: TC
Location: 6210 - 8729 (+)
Type: TC
Location: 6210 - 8729 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp003640335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.