Cluster: CasaburiG_2019_SRR6277111_bin.7_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CasaburiG_2019_SRR6277111_bin.7
- CGC Family ID: CGCFAM_05301
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_3 | 4766 | 5671 | - | GT4 |
| NULL(UNKNOWN) | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_4 | 5750 | 5866 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_5 | 6023 | 7789 | + | MarR |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_6 | 7795 | 8730 | + | 2.A.7.18.1 |
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_3
Type: CAZyme
Location: 4766 - 5671 (-)
Type: CAZyme
Location: 4766 - 5671 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_4
Type:
Location: 5750 - 5866 (-)
Type:
Location: 5750 - 5866 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_5
Type: TF
Location: 6023 - 7789 (+)
Type: TF
Location: 6023 - 7789 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_6
Type: TC
Location: 7795 - 8730 (+)
Type: TC
Location: 7795 - 8730 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_4 | vegetarian > omnivore | 16.92996 | 0.02973 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_4 | vegetarian > vegan | 16.92996 | 0.01250 |