Cluster: CasaburiG_2019_SRR6277111_bin.7_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: CasaburiG_2019_SRR6277111_bin.7
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_11 | 14936 | 17389 | - | 4.A.1.1.8 |
| NULL(UNKNOWN) | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_12 | 17411 | 17530 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_13 | 17614 | 18333 | + | GntR |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_14 | 18640 | 19956 | + | 3.A.1.1.45 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_15 | 20044 | 20898 | + | 3.A.1.1.45 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_16 | 20898 | 21737 | + | 3.A.1.1.45 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_17 | 21806 | 23005 | + | 3.A.1.1.22 |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_18 | 23471 | 25738 | - | GT35 |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_3744 | CasaburiG_2019_SRR6277111_bin.7_k141_3744_19 | 25865 | 27370 | - | GH77 |
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_11
Type: TC
Location: 14936 - 17389 (-)
Type: TC
Location: 14936 - 17389 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_12
Type:
Location: 17411 - 17530 (+)
Type:
Location: 17411 - 17530 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_13
Type: TF
Location: 17614 - 18333 (+)
Type: TF
Location: 17614 - 18333 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_14
Type: TC
Location: 18640 - 19956 (+)
Type: TC
Location: 18640 - 19956 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_15
Type: TC
Location: 20044 - 20898 (+)
Type: TC
Location: 20044 - 20898 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_16
Type: TC
Location: 20898 - 21737 (+)
Type: TC
Location: 20898 - 21737 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_17
Type: TC
Location: 21806 - 23005 (+)
Type: TC
Location: 21806 - 23005 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_18
Type: CAZyme
Location: 23471 - 25738 (-)
Type: CAZyme
Location: 23471 - 25738 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_3744_19
Type: CAZyme
Location: 25865 - 27370 (-)
Type: CAZyme
Location: 25865 - 27370 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.