Cluster: CasaburiG_2019_SRR6277111_bin.7_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: CasaburiG_2019_SRR6277111_bin.7
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_22332 | CasaburiG_2019_SRR6277111_bin.7_k141_22332_147 | 196444 | 199014 | - | GH106 |
| TF | CasaburiG_2019_SRR6277111_bin.7_k141_22332 | CasaburiG_2019_SRR6277111_bin.7_k141_22332_148 | 199131 | 200138 | + | HTH_AraC |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_22332 | CasaburiG_2019_SRR6277111_bin.7_k141_22332_149 | 200312 | 201760 | + | GH1 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_22332 | CasaburiG_2019_SRR6277111_bin.7_k141_22332_150 | 201912 | 202448 | + | 4.A.1.2.6 |
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_22332_147
Type: CAZyme
Location: 196444 - 199014 (-)
Type: CAZyme
Location: 196444 - 199014 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_22332_148
Type: TF
Location: 199131 - 200138 (+)
Type: TF
Location: 199131 - 200138 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_22332_149
Type: CAZyme
Location: 200312 - 201760 (+)
Type: CAZyme
Location: 200312 - 201760 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_22332_150
Type: TC
Location: 201912 - 202448 (+)
Type: TC
Location: 201912 - 202448 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.