Cluster: CasaburiG_2019_SRR6277111_bin.7_CGC10
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: CasaburiG_2019_SRR6277111_bin.7
- CGC Family ID: CGCFAM_00011
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_47 | 50908 | 52911 | - | GT2 |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_48 | 53128 | 54264 | + | GT2 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_49 | 54422 | 55234 | + | 3.A.1.103.4 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_50 | 55244 | 55999 | + | 3.A.1.103.1 |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_51 | 56001 | 57116 | + | GT2 |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_52 | 57125 | 58183 | + | GT2 |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_53 | 58205 | 59440 | + | GT4 |
| pfam | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_54 | 59574 | 60176 | + | IU_nuc_hydro |
| CAZyme | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_55 | 60051 | 61013 | - | GT81 |
| TC | CasaburiG_2019_SRR6277111_bin.7_k141_10015 | CasaburiG_2019_SRR6277111_bin.7_k141_10015_56 | 61136 | 61978 | + | 3.A.1.103.5 |
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_47
Type: CAZyme
Location: 50908 - 52911 (-)
Type: CAZyme
Location: 50908 - 52911 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_48
Type: CAZyme
Location: 53128 - 54264 (+)
Type: CAZyme
Location: 53128 - 54264 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_49
Type: TC
Location: 54422 - 55234 (+)
Type: TC
Location: 54422 - 55234 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_50
Type: TC
Location: 55244 - 55999 (+)
Type: TC
Location: 55244 - 55999 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_51
Type: CAZyme
Location: 56001 - 57116 (+)
Type: CAZyme
Location: 56001 - 57116 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_52
Type: CAZyme
Location: 57125 - 58183 (+)
Type: CAZyme
Location: 57125 - 58183 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_53
Type: CAZyme
Location: 58205 - 59440 (+)
Type: CAZyme
Location: 58205 - 59440 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_54
Type: pfam
Location: 59574 - 60176 (+)
Type: pfam
Location: 59574 - 60176 (+)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_55
Type: CAZyme
Location: 60051 - 61013 (-)
Type: CAZyme
Location: 60051 - 61013 (-)
Gene ID: CasaburiG_2019_SRR6277111_bin.7_k141_10015_56
Type: TC
Location: 61136 - 61978 (+)
Type: TC
Location: 61136 - 61978 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_48 | vegetarian > omnivore | 1.38322 | 0.03066 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_48 | vegetarian > vegan | 2.33316 | 0.01250 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_49 | vegetarian > vegan | 2.67917 | 0.01250 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_51 | vegetarian > omnivore | 2.31582 | 0.03066 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_51 | vegetarian > vegan | 2.66917 | 0.03566 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_52 | vegetarian > omnivore | 2.22553 | 0.03066 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_52 | vegetarian > vegan | 4.02108 | 0.01250 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_53 | vegetarian > omnivore | 2.03546 | 0.03066 |
| CasaburiG_2019_SRR6277111_bin.7_k141_10015_53 | vegetarian > vegan | 3.59136 | 0.01250 |