Cluster: CGMR100607_CGC14
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR100607
- CGC Family ID: CGCFAM_00812
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_38917 | k141_38917_4 | 2285 | 4255 | + | GT2 |
| pfam | k141_38917 | k141_38917_5 | 4293 | 4751 | + | PAP2 | PAP2_3 |
| pfam | k141_38917 | k141_38917_6 | 4748 | 5746 | + | UbiA |
| CAZyme | k141_38917 | k141_38917_7 | 5806 | 7884 | + | GT89 |
| CAZyme | k141_38917 | k141_38917_8 | 8034 | 9059 | + | CE1 |
| pfam | k141_38917 | k141_38917_9 | 9134 | 10507 | - | HNH | DUF222 |
| CAZyme | k141_38917 | k141_38917_10 | 10964 | 12937 | + | CE1 |
| NULL(UNKNOWN) | k141_38917 | k141_38917_11 | 12940 | 13440 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_38917 | k141_38917_12 | 13444 | 14373 | + | CE5 |
| sulfatase | k141_38917 | k141_38917_13 | 14582 | 16444 | + | S1_4 |
| pfam | k141_38917 | k141_38917_14 | 16781 | 21613 | + | ketoacyl-synt | PP-binding | PP-binding | Acyl_transf_1 | Thioesterase | Ketoacyl-synt_C | Abhydrolase_6 | KAsynt_C_assoc | ACP_SdgA_C |
| TC | k141_38917 | k141_38917_15 | 21634 | 23184 | + | 3.B.1.1.5 |
| pfam | k141_38917 | k141_38917_16 | 23463 | 23828 | - | DUF3054 |
| TC | k141_38917 | k141_38917_17 | 23825 | 24910 | - | 4.D.2.4.1 |
| TC | k141_38917 | k141_38917_18 | 24915 | 27233 | - | 2.A.6.5.6 |
Gene ID: k141_38917_4
Type: CAZyme
Location: 2285 - 4255 (+)
Type: CAZyme
Location: 2285 - 4255 (+)
Gene ID: k141_38917_5
Type: pfam
Location: 4293 - 4751 (+)
Type: pfam
Location: 4293 - 4751 (+)
Gene ID: k141_38917_6
Type: pfam
Location: 4748 - 5746 (+)
Type: pfam
Location: 4748 - 5746 (+)
Gene ID: k141_38917_7
Type: CAZyme
Location: 5806 - 7884 (+)
Type: CAZyme
Location: 5806 - 7884 (+)
Gene ID: k141_38917_8
Type: CAZyme
Location: 8034 - 9059 (+)
Type: CAZyme
Location: 8034 - 9059 (+)
Gene ID: k141_38917_9
Type: pfam
Location: 9134 - 10507 (-)
Type: pfam
Location: 9134 - 10507 (-)
Gene ID: k141_38917_10
Type: CAZyme
Location: 10964 - 12937 (+)
Type: CAZyme
Location: 10964 - 12937 (+)
Gene ID: k141_38917_11
Type:
Location: 12940 - 13440 (+)
Type:
Location: 12940 - 13440 (+)
Gene ID: k141_38917_12
Type: CAZyme
Location: 13444 - 14373 (+)
Type: CAZyme
Location: 13444 - 14373 (+)
Gene ID: k141_38917_13
Type: sulfatase
Location: 14582 - 16444 (+)
Type: sulfatase
Location: 14582 - 16444 (+)
Gene ID: k141_38917_14
Type: pfam
Location: 16781 - 21613 (+)
Type: pfam
Location: 16781 - 21613 (+)
Gene ID: k141_38917_15
Type: TC
Location: 21634 - 23184 (+)
Type: TC
Location: 21634 - 23184 (+)
Gene ID: k141_38917_16
Type: pfam
Location: 23463 - 23828 (-)
Type: pfam
Location: 23463 - 23828 (-)
Gene ID: k141_38917_17
Type: TC
Location: 23825 - 24910 (-)
Type: TC
Location: 23825 - 24910 (-)
Gene ID: k141_38917_18
Type: TC
Location: 24915 - 27233 (-)
Type: TC
Location: 24915 - 27233 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Species
Corynebacterium glutamicum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.