Cluster: CGMR100448_CGC21
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR100448
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_462685 | k141_462685_24 | 20372 | 21049 | + | 9.B.143.2.1 |
| STP | k141_462685 | k141_462685_25 | 21269 | 22750 | + | CBS | CBS |
| pfam | k141_462685 | k141_462685_26 | 23025 | 23870 | + | PRD | PRD | CAT_RBD |
| TC | k141_462685 | k141_462685_27 | 24052 | 25944 | + | 4.A.1.2.6 |
| CAZyme | k141_462685 | k141_462685_28 | 26118 | 27554 | + | GH1 |
| sulfatase | k141_462685 | k141_462685_29 | 27667 | 28359 | + | S1_9 |
| CAZyme | k141_462685 | k141_462685_30 | 28411 | 29841 | + | GH1 |
| pfam | k141_462685 | k141_462685_31 | 29878 | 30723 | + | S6PP | Hydrolase_3 |
| CAZyme | k141_462685 | k141_462685_32 | 30778 | 32220 | + | GH1 |
| STP | k141_462685 | k141_462685_33 | 32311 | 32886 | - | TetR_N |
| TC | k141_462685 | k141_462685_34 | 32996 | 33892 | + | 3.A.1.126.1 |
| NULL(UNKNOWN) | k141_462685 | k141_462685_35 | 33889 | 35478 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_462685 | k141_462685_36 | 35787 | 36704 | + | 2.A.69.4.5 |
Gene ID: k141_462685_24
Type: TC
Location: 20372 - 21049 (+)
Type: TC
Location: 20372 - 21049 (+)
Gene ID: k141_462685_25
Type: STP
Location: 21269 - 22750 (+)
Type: STP
Location: 21269 - 22750 (+)
Gene ID: k141_462685_26
Type: pfam
Location: 23025 - 23870 (+)
Type: pfam
Location: 23025 - 23870 (+)
Gene ID: k141_462685_27
Type: TC
Location: 24052 - 25944 (+)
Type: TC
Location: 24052 - 25944 (+)
Gene ID: k141_462685_28
Type: CAZyme
Location: 26118 - 27554 (+)
Type: CAZyme
Location: 26118 - 27554 (+)
Gene ID: k141_462685_29
Type: sulfatase
Location: 27667 - 28359 (+)
Type: sulfatase
Location: 27667 - 28359 (+)
Gene ID: k141_462685_30
Type: CAZyme
Location: 28411 - 29841 (+)
Type: CAZyme
Location: 28411 - 29841 (+)
Gene ID: k141_462685_31
Type: pfam
Location: 29878 - 30723 (+)
Type: pfam
Location: 29878 - 30723 (+)
Gene ID: k141_462685_32
Type: CAZyme
Location: 30778 - 32220 (+)
Type: CAZyme
Location: 30778 - 32220 (+)
Gene ID: k141_462685_33
Type: STP
Location: 32311 - 32886 (-)
Type: STP
Location: 32311 - 32886 (-)
Gene ID: k141_462685_34
Type: TC
Location: 32996 - 33892 (+)
Type: TC
Location: 32996 - 33892 (+)
Gene ID: k141_462685_35
Type:
Location: 33889 - 35478 (+)
Type:
Location: 33889 - 35478 (+)
Gene ID: k141_462685_36
Type: TC
Location: 35787 - 36704 (+)
Type: TC
Location: 35787 - 36704 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus_A
Species
Lactococcus_A raffinolactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.