Cluster: CGMR100179_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR100179
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_15467 | k141_15467_31 | 32518 | 33708 | - | GT4 |
| CAZyme | k141_15467 | k141_15467_32 | 33705 | 34964 | - | GT4 |
| NULL(UNKNOWN) | k141_15467 | k141_15467_33 | 34942 | 36213 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_15467 | k141_15467_34 | 36210 | 37376 | - | GT4 |
| CAZyme | k141_15467 | k141_15467_35 | 37450 | 38568 | - | GT4 |
| CAZyme | k141_15467 | k141_15467_36 | 38569 | 39750 | - | GT4 |
| TC | k141_15467 | k141_15467_37 | 39750 | 40793 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | k141_15467 | k141_15467_38 | 40804 | 41139 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_15467 | k141_15467_39 | 41141 | 41617 | - | DUF6232 |
| CAZyme | k141_15467 | k141_15467_40 | 41621 | 42820 | - | GT4 |
| pfam | k141_15467 | k141_15467_41 | 42822 | 43703 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| TC | k141_15467 | k141_15467_42 | 43700 | 44320 | - | 9.B.18.1.3 |
Gene ID: k141_15467_31
Type: CAZyme
Location: 32518 - 33708 (-)
Type: CAZyme
Location: 32518 - 33708 (-)
Gene ID: k141_15467_32
Type: CAZyme
Location: 33705 - 34964 (-)
Type: CAZyme
Location: 33705 - 34964 (-)
Gene ID: k141_15467_33
Type:
Location: 34942 - 36213 (-)
Type:
Location: 34942 - 36213 (-)
Gene ID: k141_15467_34
Type: CAZyme
Location: 36210 - 37376 (-)
Type: CAZyme
Location: 36210 - 37376 (-)
Gene ID: k141_15467_35
Type: CAZyme
Location: 37450 - 38568 (-)
Type: CAZyme
Location: 37450 - 38568 (-)
Gene ID: k141_15467_36
Type: CAZyme
Location: 38569 - 39750 (-)
Type: CAZyme
Location: 38569 - 39750 (-)
Gene ID: k141_15467_37
Type: TC
Location: 39750 - 40793 (-)
Type: TC
Location: 39750 - 40793 (-)
Gene ID: k141_15467_38
Type:
Location: 40804 - 41139 (-)
Type:
Location: 40804 - 41139 (-)
Gene ID: k141_15467_39
Type: pfam
Location: 41141 - 41617 (-)
Type: pfam
Location: 41141 - 41617 (-)
Gene ID: k141_15467_40
Type: CAZyme
Location: 41621 - 42820 (-)
Type: CAZyme
Location: 41621 - 42820 (-)
Gene ID: k141_15467_41
Type: pfam
Location: 42822 - 43703 (-)
Type: pfam
Location: 42822 - 43703 (-)
Gene ID: k141_15467_42
Type: TC
Location: 43700 - 44320 (-)
Type: TC
Location: 43700 - 44320 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia spiroformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.