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Cluster: CGMR099442_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_106415 k141_106415_19 18233 20017 + GH13_10
CAZyme k141_106415 k141_106415_20 20014 22482 + GH13_26
CAZyme k141_106415 k141_106415_21 22498 24573 + CBM48 | GH13_11
TF k141_106415 k141_106415_22 24576 25124 - 0042156
pfam k141_106415 k141_106415_23 25340 26062 + DUF969
TC k141_106415 k141_106415_24 26059 27045 + 9.B.211.1.1
pfam k141_106415 k141_106415_25 27055 28050 + DUF2891
TC k141_106415 k141_106415_26 28087 29496 - 2.A.1.3.17
TF k141_106415 k141_106415_27 29614 30525 + HTH_1
TC k141_106415 k141_106415_28 30493 31950 - 2.A.21.9.1
TF k141_106415 k141_106415_29 31940 32623 - Trans_reg_C
TC k141_106415 k141_106415_30 32786 34171 + 1.B.17.3.4
pfam k141_106415 k141_106415_31 34199 34540 + CusF_Ec
TC k141_106415 k141_106415_32 34552 35793 + 2.A.6.1.4
TC k141_106415 k141_106415_33 35804 38944 + 2.A.6.1.3
Gene ID: k141_106415_19
Type: CAZyme
Location: 18233 - 20017 (+)
Gene ID: k141_106415_20
Type: CAZyme
Location: 20014 - 22482 (+)
Gene ID: k141_106415_21
Type: CAZyme
Location: 22498 - 24573 (+)
Gene ID: k141_106415_22
Type: TF
Location: 24576 - 25124 (-)
Gene ID: k141_106415_23
Type: pfam
Location: 25340 - 26062 (+)
Gene ID: k141_106415_24
Type: TC
Location: 26059 - 27045 (+)
Gene ID: k141_106415_25
Type: pfam
Location: 27055 - 28050 (+)
Gene ID: k141_106415_26
Type: TC
Location: 28087 - 29496 (-)
Gene ID: k141_106415_27
Type: TF
Location: 29614 - 30525 (+)
Gene ID: k141_106415_28
Type: TC
Location: 30493 - 31950 (-)
Gene ID: k141_106415_29
Type: TF
Location: 31940 - 32623 (-)
Gene ID: k141_106415_30
Type: TC
Location: 32786 - 34171 (+)
Gene ID: k141_106415_31
Type: pfam
Location: 34199 - 34540 (+)
Gene ID: k141_106415_32
Type: TC
Location: 34552 - 35793 (+)
Gene ID: k141_106415_33
Type: TC
Location: 35804 - 38944 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_106415_21 vegetarian > omnivore 3.32210 0.02654
k141_106415_21 vegetarian > vegan 1.12466 0.03458
k141_106415_23 vegetarian > vegan 1.05114 0.03458
k141_106415_24 vegetarian > omnivore 1.39124 0.02654
k141_106415_25 vegetarian > omnivore 1.10991 0.02654
k141_106415_25 vegetarian > vegan 2.13830 0.03458
k141_106415_29 vegetarian > vegan 1.87167 0.03458
k141_106415_32 vegetarian > omnivore 1.16748 0.02654
k141_106415_32 vegetarian > vegan 1.44824 0.03458

🧭 Explore Read Mapping of CGC

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