Cluster: CGMR099006_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR099006
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_5095 | k141_5095_52 | 51692 | 53068 | - | GH13_20 |
| TC | k141_5095 | k141_5095_53 | 53251 | 54447 | - | 2.A.1.2.18 |
| pfam | k141_5095 | k141_5095_54 | 54552 | 55031 | - | tRNA_edit |
| TC | k141_5095 | k141_5095_55 | 55127 | 57484 | - | 9.A.8.1.6 |
| TC | k141_5095 | k141_5095_56 | 58061 | 59524 | - | 2.A.3.2.3 |
Gene ID: k141_5095_52
Type: CAZyme
Location: 51692 - 53068 (-)
Type: CAZyme
Location: 51692 - 53068 (-)
Gene ID: k141_5095_53
Type: TC
Location: 53251 - 54447 (-)
Type: TC
Location: 53251 - 54447 (-)
Gene ID: k141_5095_54
Type: pfam
Location: 54552 - 55031 (-)
Type: pfam
Location: 54552 - 55031 (-)
Gene ID: k141_5095_55
Type: TC
Location: 55127 - 57484 (-)
Type: TC
Location: 55127 - 57484 (-)
Gene ID: k141_5095_56
Type: TC
Location: 58061 - 59524 (-)
Type: TC
Location: 58061 - 59524 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_5095_56 | vegan > omnivore | 1.50671 | 0.00566 |