Cluster: CGMR099006_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR099006
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_22044 | k141_22044_116 | 129916 | 136329 | - | GH31_18 |
| TF | k141_22044 | k141_22044_117 | 136843 | 137283 | - | MarR |
| NULL(UNKNOWN) | k141_22044 | k141_22044_118 | 137388 | 137714 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_22044 | k141_22044_119 | 137910 | 138737 | - | 4.A.6.1.6 |
| TC | k141_22044 | k141_22044_120 | 138737 | 139594 | - | 4.A.6.1.1 |
| TC | k141_22044 | k141_22044_121 | 139666 | 140154 | - | 4.A.6.1.9 |
Gene ID: k141_22044_116
Type: CAZyme
Location: 129916 - 136329 (-)
Type: CAZyme
Location: 129916 - 136329 (-)
Gene ID: k141_22044_117
Type: TF
Location: 136843 - 137283 (-)
Type: TF
Location: 136843 - 137283 (-)
Gene ID: k141_22044_118
Type:
Location: 137388 - 137714 (-)
Type:
Location: 137388 - 137714 (-)
Gene ID: k141_22044_119
Type: TC
Location: 137910 - 138737 (-)
Type: TC
Location: 137910 - 138737 (-)
Gene ID: k141_22044_120
Type: TC
Location: 138737 - 139594 (-)
Type: TC
Location: 138737 - 139594 (-)
Gene ID: k141_22044_121
Type: TC
Location: 139666 - 140154 (-)
Type: TC
Location: 139666 - 140154 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_22044_116 | vegetarian > omnivore | 1.35246 | 0.03673 |
| k141_22044_116 | vegetarian > vegan | 2.10555 | 0.00969 |