Cluster: CGMR099006_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR099006
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_29464 | k141_29464_67 | 81960 | 82745 | + | 9.B.18.1.2 |
| TC | k141_29464 | k141_29464_68 | 82749 | 83393 | + | 9.B.18.1.2 |
| STP | k141_29464 | k141_29464_69 | 83428 | 84588 | + | Aminotran_1_2 |
| CAZyme | k141_29464 | k141_29464_70 | 84591 | 85721 | + | GT4 |
| CAZyme | k141_29464 | k141_29464_71 | 85722 | 86732 | + | GT2 |
| pfam | k141_29464 | k141_29464_72 | 86840 | 88009 | + | Wzy_C |
| CAZyme | k141_29464 | k141_29464_73 | 88006 | 88998 | + | GT2 |
Gene ID: k141_29464_67
Type: TC
Location: 81960 - 82745 (+)
Type: TC
Location: 81960 - 82745 (+)
Gene ID: k141_29464_68
Type: TC
Location: 82749 - 83393 (+)
Type: TC
Location: 82749 - 83393 (+)
Gene ID: k141_29464_69
Type: STP
Location: 83428 - 84588 (+)
Type: STP
Location: 83428 - 84588 (+)
Gene ID: k141_29464_70
Type: CAZyme
Location: 84591 - 85721 (+)
Type: CAZyme
Location: 84591 - 85721 (+)
Gene ID: k141_29464_71
Type: CAZyme
Location: 85722 - 86732 (+)
Type: CAZyme
Location: 85722 - 86732 (+)
Gene ID: k141_29464_72
Type: pfam
Location: 86840 - 88009 (+)
Type: pfam
Location: 86840 - 88009 (+)
Gene ID: k141_29464_73
Type: CAZyme
Location: 88006 - 88998 (+)
Type: CAZyme
Location: 88006 - 88998 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.