Cluster: CGMR098330_CGC21
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR098330
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_168538 | k141_168538_41 | 39955 | 42816 | + | 3.A.12.1.2 |
| pfam | k141_168538 | k141_168538_42 | 42850 | 43491 | + | LolA |
| CAZyme | k141_168538 | k141_168538_43 | 43530 | 44159 | - | GH23 |
| pfam | k141_168538 | k141_168538_44 | 44302 | 44628 | + | YccV-like |
| NULL(UNKNOWN) | k141_168538 | k141_168538_45 | 44838 | 45014 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_168538 | k141_168538_46 | 44993 | 47503 | + | 5.A.3.4.3 |
| pfam | k141_168538 | k141_168538_47 | 47638 | 47955 | + | CMD |
| TC | k141_168538 | k141_168538_48 | 48085 | 49185 | + | 2.A.56.3.4 |
Gene ID: k141_168538_41
Type: TC
Location: 39955 - 42816 (+)
Type: TC
Location: 39955 - 42816 (+)
Gene ID: k141_168538_42
Type: pfam
Location: 42850 - 43491 (+)
Type: pfam
Location: 42850 - 43491 (+)
Gene ID: k141_168538_43
Type: CAZyme
Location: 43530 - 44159 (-)
Type: CAZyme
Location: 43530 - 44159 (-)
Gene ID: k141_168538_44
Type: pfam
Location: 44302 - 44628 (+)
Type: pfam
Location: 44302 - 44628 (+)
Gene ID: k141_168538_45
Type:
Location: 44838 - 45014 (+)
Type:
Location: 44838 - 45014 (+)
Gene ID: k141_168538_46
Type: TC
Location: 44993 - 47503 (+)
Type: TC
Location: 44993 - 47503 (+)
Gene ID: k141_168538_47
Type: pfam
Location: 47638 - 47955 (+)
Type: pfam
Location: 47638 - 47955 (+)
Gene ID: k141_168538_48
Type: TC
Location: 48085 - 49185 (+)
Type: TC
Location: 48085 - 49185 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Rhodobacteraceae
Genus
Pontibaca
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.