Cluster: CGMR098330_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR098330
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_269061 | k141_269061_15 | 12579 | 14252 | - | 3.D.4.6.1 |
| pfam | k141_269061 | k141_269061_16 | 14481 | 14903 | + | HIT | DcpS_C |
| TC | k141_269061 | k141_269061_17 | 15008 | 15928 | + | 2.A.4.1.1 |
| pfam | k141_269061 | k141_269061_18 | 16106 | 17041 | + | EamA | EamA |
| TC | k141_269061 | k141_269061_19 | 17048 | 17992 | - | 9.B.126.2.4 |
| TC | k141_269061 | k141_269061_20 | 18315 | 19094 | + | 5.A.3.10.1 |
| TC | k141_269061 | k141_269061_21 | 19075 | 20271 | + | 5.A.3.10.1 |
| TC | k141_269061 | k141_269061_22 | 20264 | 23356 | + | 5.A.3.10.1 |
| CAZyme | k141_269061 | k141_269061_23 | 23591 | 24976 | + | GT4 |
| TC | k141_269061 | k141_269061_24 | 25094 | 25882 | - | 3.D.3.1.1 |
| TC | k141_269061 | k141_269061_25 | 25900 | 27249 | - | 3.E.2.1.1 |
| TC | k141_269061 | k141_269061_26 | 27261 | 27884 | - | 3.D.3.1.1 |
| TC | k141_269061 | k141_269061_27 | 28035 | 28736 | - | 3.A.1.19.1 |
| TC | k141_269061 | k141_269061_28 | 28723 | 30279 | - | 3.A.1.19.1 |
| TC | k141_269061 | k141_269061_29 | 30255 | 31232 | - | 3.A.1.19.1 |
Gene ID: k141_269061_15
Type: TC
Location: 12579 - 14252 (-)
Type: TC
Location: 12579 - 14252 (-)
Gene ID: k141_269061_16
Type: pfam
Location: 14481 - 14903 (+)
Type: pfam
Location: 14481 - 14903 (+)
Gene ID: k141_269061_17
Type: TC
Location: 15008 - 15928 (+)
Type: TC
Location: 15008 - 15928 (+)
Gene ID: k141_269061_18
Type: pfam
Location: 16106 - 17041 (+)
Type: pfam
Location: 16106 - 17041 (+)
Gene ID: k141_269061_19
Type: TC
Location: 17048 - 17992 (-)
Type: TC
Location: 17048 - 17992 (-)
Gene ID: k141_269061_20
Type: TC
Location: 18315 - 19094 (+)
Type: TC
Location: 18315 - 19094 (+)
Gene ID: k141_269061_21
Type: TC
Location: 19075 - 20271 (+)
Type: TC
Location: 19075 - 20271 (+)
Gene ID: k141_269061_22
Type: TC
Location: 20264 - 23356 (+)
Type: TC
Location: 20264 - 23356 (+)
Gene ID: k141_269061_23
Type: CAZyme
Location: 23591 - 24976 (+)
Type: CAZyme
Location: 23591 - 24976 (+)
Gene ID: k141_269061_24
Type: TC
Location: 25094 - 25882 (-)
Type: TC
Location: 25094 - 25882 (-)
Gene ID: k141_269061_25
Type: TC
Location: 25900 - 27249 (-)
Type: TC
Location: 25900 - 27249 (-)
Gene ID: k141_269061_26
Type: TC
Location: 27261 - 27884 (-)
Type: TC
Location: 27261 - 27884 (-)
Gene ID: k141_269061_27
Type: TC
Location: 28035 - 28736 (-)
Type: TC
Location: 28035 - 28736 (-)
Gene ID: k141_269061_28
Type: TC
Location: 28723 - 30279 (-)
Type: TC
Location: 28723 - 30279 (-)
Gene ID: k141_269061_29
Type: TC
Location: 30255 - 31232 (-)
Type: TC
Location: 30255 - 31232 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Rhodobacteraceae
Genus
Pontibaca
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.