Cluster: CGMR097589_CGC3
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR097589
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_77828 | k141_77828_3 | 1962 | 3839 | - | 9.A.8.1.5 |
| STP | k141_77828 | k141_77828_4 | 3832 | 4074 | - | FeoA |
| TC | k141_77828 | k141_77828_5 | 4193 | 4864 | + | 3.A.11.1.1 |
| TC | k141_77828 | k141_77828_6 | 4882 | 5382 | + | 3.A.11.1.4 |
| TC | k141_77828 | k141_77828_7 | 5435 | 7696 | + | 3.A.11.1.1 |
| pfam | k141_77828 | k141_77828_8 | 7722 | 8750 | + | DNA_pol3_delta | DNA_pol3_delta_C |
| pfam | k141_77828 | k141_77828_9 | 8855 | 9115 | - | Ribosomal_S20p |
| TC | k141_77828 | k141_77828_10 | 9337 | 10383 | + | 2.A.20.1.5 |
| pfam | k141_77828 | k141_77828_11 | 10414 | 11037 | + | PhoU_div |
| TC | k141_77828 | k141_77828_12 | 11072 | 12937 | - | 3.A.3.6.24 |
| pfam | k141_77828 | k141_77828_13 | 13161 | 13997 | - | BacA |
| TF | k141_77828 | k141_77828_14 | 14211 | 15089 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_77828 | k141_77828_15 | 15172 | 16248 | + | GH179 |
| pfam | k141_77828 | k141_77828_16 | 16267 | 16995 | + | ThuA |
| pfam | k141_77828 | k141_77828_17 | 16997 | 17965 | + | AP_endonuc_2 |
| CAZyme | k141_77828 | k141_77828_18 | 17982 | 19034 | + | GH109 |
Gene ID: k141_77828_3
Type: TC
Location: 1962 - 3839 (-)
Type: TC
Location: 1962 - 3839 (-)
Gene ID: k141_77828_4
Type: STP
Location: 3832 - 4074 (-)
Type: STP
Location: 3832 - 4074 (-)
Gene ID: k141_77828_5
Type: TC
Location: 4193 - 4864 (+)
Type: TC
Location: 4193 - 4864 (+)
Gene ID: k141_77828_6
Type: TC
Location: 4882 - 5382 (+)
Type: TC
Location: 4882 - 5382 (+)
Gene ID: k141_77828_7
Type: TC
Location: 5435 - 7696 (+)
Type: TC
Location: 5435 - 7696 (+)
Gene ID: k141_77828_8
Type: pfam
Location: 7722 - 8750 (+)
Type: pfam
Location: 7722 - 8750 (+)
Gene ID: k141_77828_9
Type: pfam
Location: 8855 - 9115 (-)
Type: pfam
Location: 8855 - 9115 (-)
Gene ID: k141_77828_10
Type: TC
Location: 9337 - 10383 (+)
Type: TC
Location: 9337 - 10383 (+)
Gene ID: k141_77828_11
Type: pfam
Location: 10414 - 11037 (+)
Type: pfam
Location: 10414 - 11037 (+)
Gene ID: k141_77828_12
Type: TC
Location: 11072 - 12937 (-)
Type: TC
Location: 11072 - 12937 (-)
Gene ID: k141_77828_13
Type: pfam
Location: 13161 - 13997 (-)
Type: pfam
Location: 13161 - 13997 (-)
Gene ID: k141_77828_14
Type: TF
Location: 14211 - 15089 (+)
Type: TF
Location: 14211 - 15089 (+)
Gene ID: k141_77828_15
Type: CAZyme
Location: 15172 - 16248 (+)
Type: CAZyme
Location: 15172 - 16248 (+)
Gene ID: k141_77828_16
Type: pfam
Location: 16267 - 16995 (+)
Type: pfam
Location: 16267 - 16995 (+)
Gene ID: k141_77828_17
Type: pfam
Location: 16997 - 17965 (+)
Type: pfam
Location: 16997 - 17965 (+)
Gene ID: k141_77828_18
Type: CAZyme
Location: 17982 - 19034 (+)
Type: CAZyme
Location: 17982 - 19034 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Vagococcaceae
Genus
Vagococcus_A
Species
Vagococcus_A lutrae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.