Cluster: CGMR096876_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR096876
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_433904 | k141_433904_16 | 15304 | 16347 | + | 3.A.1.24.2 |
| TC | k141_433904 | k141_433904_17 | 16357 | 17046 | + | 3.A.1.24.5 |
| TC | k141_433904 | k141_433904_18 | 17166 | 17942 | + | 3.A.1.24.5 |
| pfam | k141_433904 | k141_433904_19 | 18074 | 19915 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH |
| pfam | k141_433904 | k141_433904_20 | 19921 | 20583 | - | Isochorismatase |
| TC | k141_433904 | k141_433904_21 | 20729 | 22348 | - | 1.B.52.2.1 |
| CAZyme | k141_433904 | k141_433904_22 | 22540 | 23349 | - | GT2 |
| CAZyme | k141_433904 | k141_433904_23 | 23349 | 24113 | - | GT2 |
Gene ID: k141_433904_16
Type: TC
Location: 15304 - 16347 (+)
Type: TC
Location: 15304 - 16347 (+)
Gene ID: k141_433904_17
Type: TC
Location: 16357 - 17046 (+)
Type: TC
Location: 16357 - 17046 (+)
Gene ID: k141_433904_18
Type: TC
Location: 17166 - 17942 (+)
Type: TC
Location: 17166 - 17942 (+)
Gene ID: k141_433904_19
Type: pfam
Location: 18074 - 19915 (+)
Type: pfam
Location: 18074 - 19915 (+)
Gene ID: k141_433904_20
Type: pfam
Location: 19921 - 20583 (-)
Type: pfam
Location: 19921 - 20583 (-)
Gene ID: k141_433904_21
Type: TC
Location: 20729 - 22348 (-)
Type: TC
Location: 20729 - 22348 (-)
Gene ID: k141_433904_22
Type: CAZyme
Location: 22540 - 23349 (-)
Type: CAZyme
Location: 22540 - 23349 (-)
Gene ID: k141_433904_23
Type: CAZyme
Location: 23349 - 24113 (-)
Type: CAZyme
Location: 23349 - 24113 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.