Cluster: CGMR096399_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096399
- CGC Family ID: CGCFAM_03883
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_458970 | k141_458970_20 | 17143 | 17748 | + | AA6 |
| pfam | k141_458970 | k141_458970_21 | 17741 | 18160 | + | DUF2069 |
| STP | k141_458970 | k141_458970_22 | 18224 | 19168 | - | Pyr_redox_2 |
| TC | k141_458970 | k141_458970_23 | 19354 | 20100 | + | 2.A.121.1.3 |
| pfam | k141_458970 | k141_458970_24 | 20155 | 21024 | - | Dyp_perox_C |
| pfam | k141_458970 | k141_458970_25 | 21111 | 21752 | + | Lactamase_B |
| TC | k141_458970 | k141_458970_26 | 21833 | 22525 | + | 9.B.186.1.1 |
Gene ID: k141_458970_20
Type: CAZyme
Location: 17143 - 17748 (+)
Type: CAZyme
Location: 17143 - 17748 (+)
Gene ID: k141_458970_21
Type: pfam
Location: 17741 - 18160 (+)
Type: pfam
Location: 17741 - 18160 (+)
Gene ID: k141_458970_22
Type: STP
Location: 18224 - 19168 (-)
Type: STP
Location: 18224 - 19168 (-)
Gene ID: k141_458970_23
Type: TC
Location: 19354 - 20100 (+)
Type: TC
Location: 19354 - 20100 (+)
Gene ID: k141_458970_24
Type: pfam
Location: 20155 - 21024 (-)
Type: pfam
Location: 20155 - 21024 (-)
Gene ID: k141_458970_25
Type: pfam
Location: 21111 - 21752 (+)
Type: pfam
Location: 21111 - 21752 (+)
Gene ID: k141_458970_26
Type: TC
Location: 21833 - 22525 (+)
Type: TC
Location: 21833 - 22525 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Species
Thiopseudomonas sp012518175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.