Cluster: CGMR095089_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR095089
- CGC Family ID: CGCFAM_09021
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_234174 | k141_234174_29 | 21923 | 22990 | - | CE1 |
| CAZyme | k141_234174 | k141_234174_30 | 22997 | 24079 | - | CE1 |
| pfam | k141_234174 | k141_234174_31 | 24233 | 24682 | + | dCMP_cyt_deam_1 | MafB19-deam |
| peptidase | k141_234174 | k141_234174_32 | 24734 | 25807 | + | S66.UPW |
| TC | k141_234174 | k141_234174_33 | 25847 | 27448 | + | 3.A.1.121.4 |
| pfam | k141_234174 | k141_234174_34 | 27472 | 28071 | + | UPF0029 |
| pfam | k141_234174 | k141_234174_35 | 28133 | 28516 | - | Thioredoxin | Thioredoxin_2 | Thioredoxin_9 |
| TC | k141_234174 | k141_234174_36 | 28652 | 29941 | - | 2.A.40.7.6 |
| pfam | k141_234174 | k141_234174_37 | 30028 | 31056 | + | TsaD |
| TC | k141_234174 | k141_234174_38 | 31053 | 31745 | - | 9.B.31.1.1 |
| pfam | k141_234174 | k141_234174_39 | 31929 | 32678 | + | SurE |
| pfam | k141_234174 | k141_234174_40 | 32694 | 33554 | + | RrnaAD | PCMT |
| CAZyme | k141_234174 | k141_234174_41 | 33678 | 34400 | + | CBM50 |
Gene ID: k141_234174_29
Type: CAZyme
Location: 21923 - 22990 (-)
Type: CAZyme
Location: 21923 - 22990 (-)
Gene ID: k141_234174_30
Type: CAZyme
Location: 22997 - 24079 (-)
Type: CAZyme
Location: 22997 - 24079 (-)
Gene ID: k141_234174_31
Type: pfam
Location: 24233 - 24682 (+)
Type: pfam
Location: 24233 - 24682 (+)
Gene ID: k141_234174_32
Type: peptidase
Location: 24734 - 25807 (+)
Type: peptidase
Location: 24734 - 25807 (+)
Gene ID: k141_234174_33
Type: TC
Location: 25847 - 27448 (+)
Type: TC
Location: 25847 - 27448 (+)
Gene ID: k141_234174_34
Type: pfam
Location: 27472 - 28071 (+)
Type: pfam
Location: 27472 - 28071 (+)
Gene ID: k141_234174_35
Type: pfam
Location: 28133 - 28516 (-)
Type: pfam
Location: 28133 - 28516 (-)
Gene ID: k141_234174_36
Type: TC
Location: 28652 - 29941 (-)
Type: TC
Location: 28652 - 29941 (-)
Gene ID: k141_234174_37
Type: pfam
Location: 30028 - 31056 (+)
Type: pfam
Location: 30028 - 31056 (+)
Gene ID: k141_234174_38
Type: TC
Location: 31053 - 31745 (-)
Type: TC
Location: 31053 - 31745 (-)
Gene ID: k141_234174_39
Type: pfam
Location: 31929 - 32678 (+)
Type: pfam
Location: 31929 - 32678 (+)
Gene ID: k141_234174_40
Type: pfam
Location: 32694 - 33554 (+)
Type: pfam
Location: 32694 - 33554 (+)
Gene ID: k141_234174_41
Type: CAZyme
Location: 33678 - 34400 (+)
Type: CAZyme
Location: 33678 - 34400 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oligella
Species
Oligella sp012511555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.